### List of abstracts

###### Michal Beneš, Alexandr Žák and Tissa H. Illangasekare

*FNSPE, CTU in Prague, FNSPE, CTU in Prague and Colorado School of Mines, Golden, USA*

Abstract: We present results of the finite-element simulation of ice nucleation and growth in pores of a saturated porous medium. The ice volume expansion leads to structural changes. The ice phase is captured by the phase-field method including anisotropy. We discuss computational results and future steps in the model development.

###### Radek Fučík

*FNSPE, CTU in Prague*

Abstract:

A general method for the derivation of equivalent finite difference equations (EFDEs) and subsequent equivalent partial differential equations (EPDEs) presented for a general matrix lattice Boltzmann method (LBM). The method can be used for both the advection diffusion equations and Navier-Stokes equations in all dimensions. In principle, the EFDEs are derived using a recurrence formula. A computational algorithm is proposed for generating sequences of matrices and vectors that are used to obtain EFDEs coefficients. The resulting EFDEs and EPDEs are derived for selected velocity models and include the single relaxation time, multiple relaxation time, and cascaded LBM collision operators. The algorithm for the derivation of EFDEs and EPDEs is implemented in C++ using the GiNaC library for symbolic algebraic computations. Its iplementation is available under the terms and conditions of the GNU general public license (GPL). The talk will summarize open problems for EPDEs for LBM with source terms.

###### Pavel Hron

*Siemens Industry Software*

Abstract:

One of the key requirements of commercial Computational Fluid Dynamics (CFD) based simulation software is great parallel scalability. The parallel performance of STAR-CCM+ is evaluated on several industrial test cases for both, modern CPU and GPU architectures. The computational times on high-end hardware can be reduced from weeks to hours.

###### Vladimír Jarý, Bc. Jan Vondruška. Ing. Martin Zemko

*FNSPE, CTU in Prague*

Abstract:

Modern experiments in high energy physics strongly depend on effient data acquistion (DAQ) systems. In this contribution, we will focus on the DAQ system of the AMBER experiment at CERN laboratory in Geneva, Switzerland. We briefly introduce overall hardware architecture of the system, then we will present the software part that is used mainly for run control, configuration, and monitoring.

Often, it is necessary to access the system remotely. However, as the main parts of the software are desktop applications with Qt-based graphical user interface, the remote access requires fast and stable network connection. We analyse the possibility to replace selected configuration tools with web applications. We also propose to develop library of functions to implement a common command line library that would cover the most important aspects of the control and monitoring functionality. The combination of both approaches would greatly reduce requirements on the connection and would simplify the remote work.

We discuss the current state of the implementation of the proposed applications. We summarize the contribution by giving outlook into the future development.

###### Miroslav Kolář

*CTU in Prague*

Abstract: In this talk we focus on the problem of image segmentation by means of the flow of smooth parametrized curves. Particular reason for the choice of direct description of moving segmentation curve is simplistic descritption and easiness to recover geometrical information of the segmented object. The motivation is in the medical imaging, nd more precisely, in retrieving the geometrical information of tumor slices.

###### Jaromír Kukal, Michal Beneš

*FNSPE, CTU in Prague*

Abstract: New difference schemes for fractional Laplacian and fractional gradient wil be presented for 1 < alpha < 2. They are develped for regular meshes (linear, tetragonal, cubic, hexagonal, dodecahedral) and have maximum possible approximation order 4 - alpha in all grid cases and any function from C4 class. The approximation error has been verified numerically. The hexagonal and dodecahedral meshes are recommended for radially symmetric solutions.

###### Tomáš Oberhuber, Jakub Klinkovský, Radek Fučík

*FNSPE, CTU in Prague, FNSPE, CTU in Prague*

Abstract:

TNL (www.tnl-project.org) is a collection of building blocks that facilitate the development of efficient numerical solvers and HPC algorithms. It is implemented in C++ using modern programming paradigms in order to provide a flexible and user-friendly interface similar to, for example, the C++ Standard Template Library. TNL provides native support for modern hardware architectures such as multicore CPUs, GPUs, and distributed systems, which can be managed via a unified interface. In our presentation, we will demonstrate the main features of the library together with efficiency of the implemented algorithms and data structures including sparse matrices and unstructured numerical meshes.

###### Petr Pauš

*FNSPE, CTU in Prague*

Abstract:

Our contribution deals with the phenomenon in material science called multiple cross-slip of dislocations in slip planes. The numerical model is based on a mean curvature flow equation with additional forcing terms included. The curve motion in 3D space is treated using our tilting method, i.e., mapping of a 3D situation onto a single plane where the curve motion is computed. The physical forces acting on a dislocation curve are evaluated in the 3D setting.

###### Jakub Solovský, Aleš Wodecki, Monika Balázsová, Kateřina Škardová, Tomáš Oberhuber

*FNSPE, CTU in Prague / RERI, FNSPE, CTU in Prague*

Abstract:

The refractive index of thermo-optic materials changes significantly with temperature. This property allows for a layer of material with a certain temperature profile to act as a lens with desired optical properties.

The goal is to find the heat fluxes through the domain boundary that result in the given temperature profile at the given time.

We solve the PDE-constrained optimization problem using the gradient descent method. For the computation of the objective function gradient, we employ the approach based on solving the adjoint equation for Lagrange multipliers.

Both the primary and adjoint problems are solved by the Mixed-Hybrid Finite Element Method with fully implicit discretization in time.

We demonstrate that the temperature profiles given by Zernike polynomials on a circular domain can be obtained.

###### Pavel Strachota, Sebastian Nývlt, Jan Rataj, Aleš Wodecki

*FNSPE, CTU in Prague*

Abstract:

We follow up on the work presented at WS2022 aimed at determining the correct contributions of different classes of delayed neutrons to the kinetics of the VR-1 experimental nuclear reactor. The facility is installed at the Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague. We consider the system of equations of point kinetics, which is a system of linear ODE with source terms. This model can be used provided that the spatial distribution of reaction parameters inside the nuclear reactor core evolves slowly with respect to the reaction dynamics. We solve the ODE-constrained minimization problem to determine the correct values of the model parameters based on experimental measurement of reactor power output response to the changes in reactivity. The difference between the results of the simulations and the experiments is minimized by several gradient descent techniques. For the computation of the gradient, we employ both the direct method (sensitivity analysis) and the adjoint method based on solving the adjoint equation for Lagrange multipliers. We demonstrate the advantages of the adjoint approach, discuss the influence of ODE solver accuracy, properties of the individual gradient descent variants, and the structure of the local minima of the cost functional.

###### Robert Straka

*AGH University of Science and Technology*

Abstract: Combustion problems are usually described by a set of Navier-Stokes equations (NSE) together with Advection-Diffusion-Reaction equations (ADRE) for scalar quantities. We use a Lattice Boltzmann Method (LBM) to solve a system of equations related to simplified models of combustion i.e. we neglect radiation, temperature dependence of material properties, and assume ideal gases. Examples of solid state fuel combustion will be presented.

###### Lucie Súkupová

*IKEM, Prague*

Abstract:

Computed Tomography (CT) is an imaging technique that uses X-ray radiation
to generate axial slices of patients from acquired data. Acquired data are in
the form of attenuation profiles in the sinogram space that can be filtered (here
or in the frequency space), and then backprojected to the image space. One of
major developments in reconstructions was use of iterative reconstructions (IR)
of different types, firstly hybrid IR, later model-based IR that uses forward
and backforward projections. Unfortunately, IR changes the texture of noise that
negatively affects image appearance. These days, use of artificial intelligence
is beneficial because it keeps the noise texture unchanged, but the magnitude can
be decreased.

###### Jakub Šístek

*Institute of Mathematics of the Czech Academy of Sciences*

Abstract:

Immersed boundary finite element method (FEM) presents an attractive approach to simulations avoiding the generation of large body-fitted meshes. This can be tedious and challenging for complex geometries as well as for very fine meshes distributed over a parallel computer and adaptively refined during a computation. However, the price to pay are more complicated formulations for the weak enforcement of Dirichlet boundary conditions, poor conditioning of stiffness matrices, and nonstandard numerical integration at the vicinity of the boundary.

We develop multilevel balancing domain decomposition by constraints (BDDC) method tailored to the solution of the linear systems arising in the context of immersed boundary FEM with parallel adaptive grid refinement. A crucial challenge is presented by fragmenting of subdomains, which has two sources: i) the partitioning strategy based on a space-filling curve, and ii) extraction of the elements contributing to the stiffness matrix.We present these concepts, the challenges, our implementation, and numerical results for the Poisson problem on complex geometries from engineering. This is joint work with Fehmi Cirak, Eky Febrianto, Matija Kecman, and Pavel Kůs.

###### Kateřina Škardová, Tarique Hussain, Martin Genet, Radomír Chabiniok

*FNSPE, CTU in Prague*

Abstract:

This contribution explores how the spatial and temporal resolution of cardiac MRI cine images can affect the accuracy of the extracted left ventricle motion. Using a previously validated finite-element-based image registration method, the study was conducted on three subjects, for which both standard 2D cine stack (SA) and 3D cine MRI series imaging were acquired. Additionally, artificial SA-like cine image series were created from the 3D cine images to further augment the dataset. The study evaluated image series with various combinations of spatial and temporal resolution for each subject. Results indicated a strong correlation between slice thickness and the accuracy of extracted longitudinal displacement.

###### Jaroslav Tintěra

*IKEM, Prague*

Abstract:

Recently, new software to reconstruct highly accelerated data from under-sampled acquisition has appeared commercially available. This SW utilizes several modern mathematical methods to effectively denoise acquired data and also to increase sharpness of reconstructed magnetic resonance images (MRI). It includes tailored noise analysis (spatially selective noise mask), deep learning and also artificial intelligence methods based on large data sets training.

We will present first experience with this new technology and also we want to show both the clear benefit from using it but also potential risk of artifacts coming with reconstruction techniques.###### Quang Van Tran

*FNSPE, CTU in Prague*

Abstract: We propose a new approach prediction of firm’s bankruptcy in which the neural network is combined with linear discriminant analysis. We also try to improve LDA algorithm with the introduction of the robust covariance matrix. We verify the applicability of our approaches on a relatively large-scale dataset of Polish firms in manufacturing sector in period 2000-2013. The results of our analysis show that this approach can correctly classify all cases of non-bankrupted firms (in-sample and out-of-sample) and the rate of correct prediction of bankrupted firms is over eighty percent for the given dataset.

###### Jan Valášek

*Institute of Mathematics, CAS*

Abstract:

In this talk the dynamic mode decomposition (DMD) method will be introduced. It is a data-driven and model-free method which decomposes a given set of signals to DMD modes and associated DMD eigenvalues. Thus it offers a very interesting alternative to the proper orthogonal decomposition (POD) and similar methods usually used for the low-rank representation of the high-dimensional data. The advantage of DMD is better physical interpretation of the decomposition as the DMD modes have monofrequency content and the complex DMD eigenvalues provide the frequency as well as the growth/decay rate of particular mode. Moreover the DMD has solid theoretical underpinnings given by the Koopman operator. The disadvantage of DMD is a relative ambiguity of DMD mode selection which are not sorted as in the case POD decomposition. Finally an application example of the DMD analysis to the numerical simulation of flutter vibrations is presented.